# macsyfinder 20201209.dev
# /home/bneron/Projects/GEM/MacSyFinder/MacSyFinder/py37/bin/macsyfinder --sequence-db tests/data/base/test_1.fasta --db-type ordered_replicon --models-dir tests/data/models --models functional T12SS-multi-syst-exch --relative-path -w 8
# Systems found:

system id = UserReplicon_T12SS-multi-syst-exch_1
model = functional/T12SS-multi-syst-exch
replicon = UserReplicon
clusters = [('VICH001.B.00001.C001_01397', 'T1SS_abc', 11), ('VICH001.B.00001.C001_01398', 'T1SS_mfp', 12), ('VICH001.B.00001.C001_01399', 'T1SS_abc', 13), ('VICH001.B.00001.C001_01400', 'T2SS_gspD', 14)], [('VICH001.B.00001.C001_01360', 'T1SS_omf', 2)], [('VICH001.B.00001.C001_01506', 'T1SS_omf', 23)], [('VICH001.B.00001.C001_01548', 'T1SS_omf', 32)], [('VICH001.B.00001.C001_01562', 'T1SS_omf', 46)]
occ = 2
wholeness = 1.000
loci nb = 1
score = 2.700

mandatory genes:
	- T1SS_abc: 2 (T1SS_abc, T1SS_abc)
	- T1SS_mfp: 2 (T1SS_mfp, T2SS_gspD)
	- T1SS_omf: 4 (T1SS_omf, T1SS_omf, T1SS_omf, T1SS_omf)

accessory genes:

neutral genes:

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